Research Output
1. 2. 2023 – 31. 3. 2024 +
VP1
Macedo, D.H., Grybchuk, D., Režnarová, J., Votýpka, J., Klocek, D., Yurchenko, T., Ševčík, J., Magri, A., Urda Dolinská, M., Záhonová, K., Lukeš, J., Servienė, E., Jászayová, A., Serva, S., Malysheva, M.N., Frolov, A.O., Yurchenko, V., Kostygov, A.Y. (2023). Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. BMC Biology, 21(1), 191. https://doi.org/10.1186/s12915-023-01687-y
Albanaz, A.T.S., Carrington, M., Frolov, A.O., Ganyukova, A.I., Gerasimov, E.S., Kostygov, A.Y., Lukeš, J., Malysheva, M.N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S.L., Yurchenko, V., Butenko, A. (2023). Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. BMC Genomics, 24, 471. https://doi.org/10.1186/s12864-023-09591-z
Kostygov, A.Y., Albanaz, A.T.S., Butenko, A., Gerasimov, E.S., Lukeš, J., Yurchenko, V. (2024). Phylogenetic framework to explore trait evolution in Trypanosomatidae. Trends in Parasitology, 40(2), 96-99. https://doi.org/10.1016/j.pt.2023.11.009
Opperdoes, F.R., Záhonová, K., Škodová-Sveráková, I., Bučková, B., Chmelová, L′., Lukeš, J., Yurchenko, V. (2024) In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code. BMC Genomics, 25(1), 184. https://doi.org/10.1186/s12864-024-10094-8
Chmelová, L'., Záhonová, K., Albanaz, A.T.S., Hrebenyk, L., Horváth, A., Yurchenko, V., Škodová-Sveráková, I. Distribution and functional analysis of isocitrate dehydrogenases across kinetoplastids. Genome Biology and Evolution, 16(3), evae042. https://doi.org/10.1093/gbe/evae042
Usarov, G.X., Turitsin, V.S., Sattarova, X.G., Sádlová, J., ugli Mustanov, J.A., Saura, A., Yurchenko, V. (2024). Phlebotomine sand fly (Diptera: Phlebotominae) diversity in the foci of cutaneous leishmaniasis in the Surxondaryo Region of Uzbekistan: 50 years on. Parasitology Research, 123, 179. https://doi.org/10.1007/s00436-024-08191-4
Rogozin, I.B., Saura, A., Poliakov, E., Bykova, A., Roche-Lima, A., Pavlov, Y.I., Yurchenko, V. (2024). Properties and mechanisms of deletions, insertions, and substitutions in the evolutionary history of SARS-CoV-2. International Journal of Molecular Sciences, 25, 3696. https://doi.org/10.3390/ijms25073696
Bartas, M., Červeň, J., Valková, N., Volná, A., Dobrovolná, M., Šislerová, L., Baldvinsson, H., Pečinka, P., Brázda, V. (2023). RNA analysis of the longest living vertebrate Greenland shark revealed an abundance of LINE-like elements in its transcriptome. Czech Polar Reports, 13(2), 210-227. https://doi.org/10.5817/CPR2023-2-17
VP2
Dukić, M., Sredojević, D., Férová, M., Slovak, V., Lončarević, D., Dostanić, J., ... & Nedeljković, J. M. (2024). Interfacial charge transfer complexes between ZnO and benzene derivatives: Characterization and photocatalytic hydrogen production. International Journal of Hydrogen Energy, 62, 628-636. https://doi.org/10.1016/j.ijhydene.2024.03.075
Böde, K., Javornik, U., Dlouhý, O., Zsíros, O., Biswas, A., Domonkos, I., Šket, P., Karlický, V., Plavec, J., Ughy, B., Lambrev, P.H., Špunda, V., & Garab, G. (2024). Role of isotropic lipid phase in the fusion of photosystem II membranes. Photosynthesis Research, 1-14. https://doi.org/10.1007/s11120-024-01097-3
VP3
Novotný, M., Dubecký, M., & Karlický, F. (2024). Toward accurate modeling of structure and energetics of bulk hexagonal boron nitride. Journal of Computational Chemistry, 45(2), 115-121. https://doi.org/10.1002/jcc.27222
Šulka, M., Šulková, K., Jurečka, P., & Dubecký, M. (2023). Dynamic and Nondynamic Electron Correlation Energy Decomposition Based on the Node of the Hartree–Fock Slater Determinant. Journal of Chemical Theory and Computation, 19(22), 8147-8155. https://doi.org/10.1021/acs.jctc.3c00828
Vénosová, B., & Karlický, F. (2023). Modeling size and edge functionalization of MXene-based quantum dots and their effect on electronic and magnetic properties. Nanoscale Advances, 5(24), 7067-7076. https://doi.org/10.1039/d3na00474k
VP4
Jandacka, D., Casula, V., Hamill, J., Vilímek, D., Jandackova, V. K., Elavsky, S., ... & Nieminen, M. T. (2024). Regular Running Is Related to the Knee Joint Cartilage Structure in Healthy Adults. Medicine and Science in Sports and Exercise.https://DOI.org/10.1249/MSS.0000000000003386
VP6
Venglar, O., Kapustova, V., Anilkumar Sithara, A., Zihala, D., Muronova, L., Sevcikova, T., ... & Jelinek, T. (2023). Insight into the mechanism of CD34+ cell mobilisation impairment in multiple myeloma patients treated with anti‐CD38 therapy. British Journal of Haematology. https://doi.org/10.1111/bjh.19141 Epub ahead of print. PMID: 37807708.
Jelinek, T., Zihala, D., Sevcikova, T., Anilkumar Sithara, A., Kapustova, V., Sahinbegovic, H., ... & Hajek, R. (2024). Beyond the marrow: insights from comprehensive next-generation sequencing of extramedullary multiple myeloma tumors. Leukemia, 1-11. doi: 10.1038/s41375-024-02206-w. Epub ahead of print. PMID: 38493239.
VP7
Hurník, P., Režnarová, J., Chyra, Z., Motyka, O., Putnová, B. M., Čermáková, Z., ... & Štembírek, J. (2023). Enhancing oral squamous cell carcinoma prediction: the prognostic power of the worst pattern of invasion and the limited impact of molecular resection margins. Frontiers in Oncology, 13. https://doi.org/10.3389/fonc.2023.1287650
VP9
Kijonka, J., Vavra, P., Penhaker M., & Kubicek J. (2024). Representative QRS loop of the VCG record evaluation. Frontiers in Physiology, 14, 1260074. https://doi.org/10.3389/fphys.2023.1260074
Vondrak, J., Penhaker, M., & Kubicek, J. (2024). Detection of myocardial infarction using analysis of vectorcardiographic loops. Measurement, 226, 114094. https://doi.org/10.1016/j.measurement.2023.114094
Kijonka, J., Vavra, P., Penhaker, M., Bibbo, D., Kudrna, P., & Kubíček, J. (2023). Present results and methods of vectorcardiographic diagnostics of ischemic heart disease. Computers in Biology and Medicine, 107781. https://doi.org/10.1016/j.compbiomed.2023.107781
1. 4. 2024 – 30. 9. 2024 +
VP1
Afonin, D.A., Gerasimov, E.S., Škodová-Sveráková, I., Záhonová, K., Gahura, O., Albanaz, A.T.S., Myšková, E., Bykova, A., Paris, Z., Lukeš, J., Opperdoes, F.R., Horváth, A., Zimmer, S.L., Yurchenko, V. (2024) Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment. Nucleic Acids Research, 52, 3870-3885. https://doi.org/10.1093/nar/gkae168
Zavataro, A.L.E., Skýpalová, K., Vergara, P.O.T., Silva, F.M, Butenko, A., Yurchenko, V., Kostygov, A.Y., Alves, J.M.P. (2024) The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus. Protistology, 18(1), 72-81. https://doi.org/10.21685/1680-0826-2024-18-1-7
VP2
Garab, G. (2024). Revisiting the nonregulatory, constitutive nonphotochemical quenching of the absorbed light energy in oxygenic photosynthetic organisms. Photosynthetica, 62(2), 204-208. https://doi.org/10.32615/ps.2024.022
VP3
Sakhraoui, T., & Karlický, F. (2024). Prediction of induced magnetism in 2D Ti2C based MXenes by manipulating the mixed surface functionalization and metal substitution computed by xTB model Hamiltonian of the DFTB method. Physical Chemistry Chemical Physics, 26, 12862-12868. https://doi.org/10.1039/d3cp05665a
Saraswat, R., Kolos, M., Verma, R., Karlický, F., & Bhattacharya, S. (2024). Phonon assisted exciton processes in two-dimensional tungsten monocarbide. The Journal of Physical Chemistry C, 128(20), 8341-8350. https://doi.org/10.1021/acs.jpcc.4c02062
Kalmár, J., & Karlický, F. (2024). Strain-Induced Changes of Electronic and Optical Properties of Zr-based MXenes. Journal of Applied Physics, 135, 244302. https://doi.org/10.1063/5.0205991
Vénosová, B., & Karlický, F. (2024). MXene’s surface functionalization patterns and their impacts on magnetism. Physical Chemistry Chemical Physics, 26, 18500-18509. https://doi.org/10.1039/D4CP01319K
VP4
Cipryan, L., Litschmannova, M., Barot, T., Dostal, T., Sindler, D., Kutac, P., Jandacka, D. & Hofmann, P. (2024). Air pollution, cardiorespiratory fitness and biomarkers of oxidative status and inflammation in the 4HAIE study. Scientific Reports, 14(1), 9620. https://doi.org/10.1038/s41598-024-60388-w
VP9
Karnati, M., Seal, A., Jaworek-Korjakowska, J., & Krejcar, O. (2023). Facial expression recognition in-the-wild using blended feature attention network. IEEE Transactions on Instrumentation and Measurement. https://doi.org/10.1109/TIM.2023.3314815
Pakniyat, N., Ramadoss, J., Karthikeyan, A., Marek, P., Krejcar, O., & Namazi, H. (2024). Complexity-based analysis of the variations in the brain response of porn-addicted and healthy individuals under different function tasks. Fractals. https://doi.org/10.1142/S0218348X24500907
Oczka, D., Augustynek, M., Penhaker, M., & Kubicek, J. (2024). Electrogastrography measurement systems and analysis methods used in clinical practice and research: comprehensive review. Frontiers in Medicine, 11, 1369753. https://doi.org/10.3389/fmed.2024.1369753
Vivekanandhan, G., Karthikeyan, A., Pakniyat, N., Penhaker, M., Krejcar, O., & Namazi, H. (2024). ANALYSIS OF THE VARIATIONS IN BRAIN ACTIVITY IN RESPONSE TO VARIOUS COMPUTER GAMES. Fractals, 2450100. https://doi.org/10.1142/S0218348X24501007